Time Stamped Food

  • About McKenzie
  • Recipes
  • Work with Me
menu icon
go to homepage
  • About McKenzie
  • Recipes
  • Work with Me
search icon
Homepage link
  • About McKenzie
  • Recipes
  • Work with Me
×
Home

Gluten-Free Pumpkin Flaxseed Muffins with Pumpkin Spice

Updated: Sep 1, 2026 · Published: Oct 10, 2024 by McKenzie · This post may contain affiliate links ·

↓ Jump to Recipe

Is there anything more satisfying than baking pumpkin-flavored treats as the weather turns cool and the leaves start to fall? These Gluten-Free Pumpkin Flaxseed Muffins are the perfect addition to your fall baking list. They’re made with simple, wholesome ingredients like flaxseed and pumpkin butter, providing a healthy twist on classic pumpkin muffins. Not only are they moist and flavorful, but they also offer a dose of omega-3s and fiber thanks to the flaxseed.

These muffins are ideal for breakfast on the go, a quick snack, or even a healthy dessert. With just the right amount of sweetness and a warm, spicy kick from the pumpkin spice, they’re sure to be a hit with your family and friends this fall.

Ingredients for Gluten-Free Pumpkin Flaxseed Muffins

  • 1 ½ cups of gluten free flour
  • 1 teaspoon baking powder 
  • ¼ cup ground flaxseed
  • 3 tablespoons brown sugar 
  • ¼ cup of almond milk 
  • 2 eggs
  • 3 tablespoons of maple syrup 
  • 3 tablespoons pumpkin butter
  • 1 teaspoon vanilla extract
  • 1 teaspoon pumpkin spice 
  • ½ teaspoon nutmeg 
  • ⅛ teaspoon of all spice

Instructions

  1. Preheat your oven to 350°F and line a muffin tin with paper liners in every other space to allow for pillow like muffin tops. 
  2. In a large bowl, whisk together the flour, ground flaxseed, pumpkin spice, and baking powder.
  3. In a separate bowl, mix the pumpkin butter, brown sugar, egg, vanilla extract, and milk until smooth and well combined.
  4. Gradually add the wet ingredients to the dry ingredients, stirring until just combined.
  5. Fill each muffin cup about ¾ full with batter.
  6. Bake for 20-25 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
  7. Allow the muffins to cool for 5 minutes before removing them from the tin.
group of pumpkin muffins on a platter

Why You’ll Love These Muffins

  • Nutrient-Dense: Packed with flaxseed, these muffins provide extra fiber and omega-3 fatty acids that promote heart health and digestion.
  • Naturally Sweetened: Pumpkin butter and brown sugar add a natural sweetness, while the pumpkin spice brings warmth and depth.
  • Great for Meal Prep: These muffins freeze well, making them an excellent option for busy mornings or snack time.

All things pumpkin!

We have so many pumpkin recipe options here at Time Stamped Food. What can I say we love fall, the gatherings, the cozy feeling and the ability to take comfort foods and make them more nutritious! Checkout all of our pumpkin recipes here.

Print

clock clock iconcutlery cutlery iconflag flag iconfolder folder iconinstagram instagram iconpinterest pinterest iconfacebook facebook iconprint print iconsquares squares iconheart heart iconheart solid heart solid icon
group of pumpkin muffins on a platter

Gluten-Free Pumpkin Flaxseed Muffins with Pumpkin Spice


  • Author: McKenzie
  • Total Time: 35 minutes
  • Yield: 6 large muffins 1x
Print Recipe
Pin Recipe

Description

These Gluten-Free Pumpkin Flaxseed Muffins are a great way to get your energy and get in the mood for fall.


Ingredients

Scale

  • 1 ½ cups of Gluten-free Flour
  • 1 teaspoon Baking Powder 
  • ¼ cup Ground Flaxseed
  • 3 tablespoons Brown Sugar 
  • ¼ cup of Almond Milk 
  • 2 Eggs
  • 3 tablespoons Maple Syrup 
  • 3 tablespoons Pumpkin Butter
  • 1 teaspoon Vanilla Extract
  • 1 teaspoon Pumpkin Spice 
  • ½ teaspoon Nutmeg 
  • ⅛ teaspoon All Spice

Instacart Get Recipe Ingredients

Instructions

  1. Preheat your oven to 350°F and line a muffin tin with paper liners in every other space to allow for pillow like muffin tops. 
  2. In a large bowl, whisk together the flour, ground flaxseed, pumpkin spice, and baking powder.
  3. In a separate bowl, mix the pumpkin butter, brown sugar, egg, vanilla extract, and milk until smooth and well combined.
  4. Gradually add the wet ingredients to the dry ingredients, stirring until just combined.
  5. Fill each muffin cup about ¾ full with batter.
  6. Bake for 20-25 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
  7. Allow the muffins to cool for 5 minutes before removing them from the tin.

  • Prep Time: 10 minutes
  • Cook Time: 25 minutes
  • Category: Breakfast

Did you make this recipe?

Share a photo and tag us — we can't wait to see what you've made!

  • Chewy pumpkin chocolate chip cookies with cranberries and walnuts
    Pumpkin Chocolate Chip Cookies with Cranberries and Walnuts
  • slow cooker honey mustard chicken sliders on a plate
    Slow Cooker Honey Mustard Chicken
  • BBQ white beans and squash in a white serving dish
    BBQ White Beans & Summer Squash
  • Close up of chicken wings on a plate stacked
    Crispy Air Fryer Chicken Wings
McKenzie creator of Time Stamped Food eating a donut in the california sun

Hey, I'm McKenzie!

McKenzie is the recipe creator + photographer behind Time Stamped Food, sharing approachable, craveable recipes that leave more time for what matters.

Learn more

Popular

  • Bowl filled with tomatoes, feta cheese, cucumbers, green bell pepper on stripped napkin
    Santorini Salad
  • bowl of bright red apple sauce with a hand grabbing a spoon full
    Festive Red Hot Applesauce: A Perfect Holiday Side Dish
  • Close up of sliced cucumbers and strawberries in a bowl on top of a green dinner napkin with limes next to the bowl
    Cucumber Strawberry Salad with Honey Lime Dressing
  • Sliced bread loaf on a platter, with olive oil and pumpkin spice in the background and a plate with sliced bread to the side.
    Pumpkin Chai Spiced Banana Bread

Seasonal

  • Pumpkin Apple Bake in a small white dish on a wood cutting board
    Trader Joe's Pumpkin Spice Apple Bake 
  • Cinnamon apples in a small white bowl with a fork and a full gala apple in the background.
    Quick & Easy Cinnamon Apples
  • Golden-brown pumpkin protein donut on a white plate with Nutella drizzle
    Pumpkin Protein Donuts
  • Pumpkin flax seed muffin on a white napkin
    Gluten-Free Pumpkin Flaxseed Muffins with Pumpkin Spice

Footer

↑ back to top

About

  • Privacy Policy

Newsletter

  • Coming Soon!

Contact

  • Contact
  • Work with Me

As an Amazon Associate I earn from qualifying purchases.

Copyright © [2026] Foodie Pro on the Feast Plugin